Be careful using Gentoo's graphical installer. Its still a bit "rough" in places (no problem, they warn you and its new)... I was going to reload my Gentoo partition on a multipartition drive that also had Windows.
It identified the various partitions just fine and I told it (I thought) to format the Gentoo partitions and load them (leaving the Windows partition alone).
Well, make sure you have backups :-)
It re-wrote the entire partition table from scratch.